Agenda
Day One, Thursday, July 8, 2010 | |
| 7:30 – 8:30 a.m. | Registration |
Starting With the Basics | |
| 8:30 – 8:45 a.m. | Welcome David Shurtleff, Ph.D. Division of Basic Neuroscience and Behavioral Research National Institute on Drug Abuse |
| 8:45 – 9:30 a.m. | Using Registries to Expose and Discover Resources and Data: Introduction to the National Institutes of Health (NIH) Blueprint Neuroscience Information Framework, the Whole Brain Catalogue, Biocatalogue, the International Neuroinformatics Coordinating Facility and Others Maryann Martone, Ph.D. University of California, San Diego Presentation |
| 9:30 – 10:00 a.m. | Using, Harmonizing and Contributing to Ontologies/Vocabularies for Describing, Reporting and Discovering Data: Introduction to Neurolex, Bioportal and Other Community Based Tools
Maryann Martone, Ph.D. University of California, San Diego Presentation |
| 10:00 – 10:15 a.m. | Break |
Case Studies for Learning by Example and Experience | |
| 10:15 – 11:00 a.m. | Case Study 1: (NDAR) Providing an Informatics Infrastructure for Storing and Linking Imaging, Genotypic, Clinical Assessment or Other Phenotypic Information in Autism Research: Lessons Learned in Developing and Using the National Database for Autism Research Checklist
Matthew McAuliffe, Ph.D. Center for Information Technology National Institutes of Health Presentation |
| 11:00 – 11:45 a.m. | Case Study 2: (ODE) The Ontological Discovery Environment: Points to Consider When Populating and Using a Virtual Environment for the Application of High-Performance Computing to Discover Phenotypes Through Integrating Gene Sets Across Species, Tissue and Experimental Platform
Elissa Chesler, Ph.D. The Jackson Laboratory Presentation |
| 11:45 – 12:45 p.m. | Lunch (on your own) |
| 12:45 – 1:30 p.m. | Case Study 3: Generating and Reporting Time Oriented Data for Transformation, Retrieval and Abstraction to Discover Temporal Phenomenon: Lessons Learned From Data Repositories for HIV Drug Resistance and Immune Disorder Trial Management Amar K. Das, M.D., Ph.D. Stanford Center for Biomedical Informatics Research Presentation |
| 1:30 – 2:15 p.m. | Case Study 4: [PD (Parkinson’s Disease) Online, StemBook, Alzheimer’s Research Forum and SWAN (Semantic Web Applications in Neuromedicine)] Lessons Learned From Community-Based Approaches for Discovering and Using Data and Resources in Studies of Neurodegenerative Disorders Timothy Clark, M.S. Harvard Medical School Presentation |
| 2:15 – 2:30 p.m. | Break |
| 2:30 – 3:15 p.m. | Case Study 5: (NEMO and CARMEN): Theoretical and Practical Integration of Functional Brain Data: Facilitating Integration of EEG/ERP and MEG Experiments Through the Neural ElectroMagnetic Ontologies Project (NEMO) and Neurophysiology Through the Code Analysis Repository and Modeling for E-Neuroscience (CARMEN) Project Gwen Frishkoff, Ph.D. Georgia State University Presentation |
The State of Addiction Research | |
| 3:15 – 4:15 p.m. | NIDA Panel: The State of Current and Future Addiction Research Data: NIDA Harmonization Projects for Genetic Studies and for Clinical Trials Chaired by John Anderson, Ph.D., Paul Wakim, Ph.D., Ivan Montoya, M.D., Christine Colvis, Ph.D., and Mark Caulder, M.S., M.P.H. from the National Institute on Drug Abuse |
Speed Talks | |
| 4:15 – 5:00 p.m. | Five-Minute Speed Talks Attendees speak for five minutes using approximately 5 slides to describe the types of research data and resources they generate and wish to discover, and their current data-sharing and discovery paradigms. Clint Cushman, B.A. University of California, San Diego Presentation Supriya Mahajan, Ph.D. University at Buffalo The State University of New York Presentation Sandra Rodriguez-Zas, Ph.D. University of Illinois at Urbana-Champaign Presentation Adam Joseph Bloom Washington University in St. Louis Presentation Lingling Shen, Ph.D. Northeastern University Presentation Mark Southern, M.S. The Scripps Research Institute Presentation Marcy Jordan, Ph.D. University of Texas Medical Branch Presentation |
| 5:00 – 5:30 p.m. | General Discussion Feedback commentary on speed talks by workshop presenters/instructors and attendees on steps for making presented data more interoperable and more discoverable. |
| 5:30 p.m. | Adjourn |
Day Two, Friday, July 9, 2010 | |
| 8:00 – 8:30 a.m. | Registration |
| 8:30 – 8:45 a.m. | Welcome Karen Skinner, Ph.D. Division of Basic Neuroscience and Behavioral Research National Institute on Drug Abuse |
The Joy of Text | |
| 8:45 – 9:15 a.m. | Discovering Related Research Resources and Data From Unstructured Scientific Literature: Lessons Learned From the NIF Entity Pilot Study for Identifying Antibodies in Research Papers and the NIF ARRA Project for Capturing Supplementary Data From Papers Maryann Martone, Ph.D. University of California, San Diego Presentation |
| 9:15 – 10:00 a.m. | Can’t We All Just Get Along? How Do We Annotate Publications So That Emergent Knowledge Can Be Discovered Across Open-Access and Proprietary Scientific Publications? Integrating Knowledge and Data Across Web Communities Using the SWAN Annotation Framework Sudeshna Das, Ph.D. Massachusetts General Hospital Harvard Medical School Presentation |
| 10:00 – 10:15 a.m. | Break |
Getting Practical | |
| 10:15 – 10:45 a.m. | Demonstrations of Registering a Resource for NIF Federation With Actual Data Sets (Including Concept Mapping) Jeffrey S. Grethe, Ph.D. University of California, San Diego Presentation |
| 10:45 – 11:15 a.m. | Demonstrations of Using DISCO/Biositemaps for Automated Resource Discovery Jeffrey S. Grethe, Ph.D. University of California, San Diego Presentation |
Attendee Speed Talks | |
| 11:15 – 12:00 p.m. |
Five-Minute Speed Talks Attendees speak for five minutes using approximately 5 slides to describe the types of research data and resources they generate and wish to discover, and their current data-sharing and discovery paradigms. Randall Olsen, Ph.D. The Ohio State University Presentation Annamarie Stehli, M.P.H. University of California, Irvine Presentation Hui-Chen Liu, Ph.D. Baylor College of Medicine Presentation Thomas Maloney, Ph.D. Brookhaven National Laboratory Presentation Christine Cox, Ph.D. New York University Child Study Center Presentation Kun Huang, Ph.D. The Ohio State University Presentation Richard Meisch, Ph.D. University of Texas Health Science Center at Houston Presentation |
| 12:00 – 12:30 p.m. | General Discussion Feedback commentary on speed talks by workshop presenters/instructors and attendees on steps for making presented data more interoperable and more discoverable. |
| 12:30 – 1:30 p.m. | Lunch (on your own) |
Workshop Recommendations Development: Identifying and Implementing Best Practices | |
| 1:30 – 2:15 p.m. | Best Practices: Presenter/Instructor Panel Discussion Panel members summarize, itemize and rank the most important Best Practices that need to be adopted for accelerating and enhancing resource discovery and data interoperability. Discussion Leader and Summary Presentation Erich Baker, Ph.D. Baylor University Presentation Panelists Maryann Martone, Ph.D., Matthew McAuliffe, Ph.D., Elissa Chesler, Ph.D., Gwen Frishkoff, Ph.D., Sudeshna Das, Ph.D., and Jeffrey S. Grethe, Ph.D. |
| 2:15 – 3:00 p.m. | Strategies and Recommendations for Implementing Best Practices: General Discussion All attendees and presenters/instructors discuss strategies and develop workshop recommendations for implementing adoption of Best Practices to accelerate data interoperability and resource discovery within the addiction research community. |
| 3:00 p.m. | Adjourn |